Lumping: msmbuilder.lumping¶
Lumping, or coarse-graining, refers to the processing of creating a few-state model from a many-state model (lumping states together) in such a way that the lumped model can capture the long timescale dynamics (i.e. joining together states which interconvert rapidly)
Core Lumping Routines¶
| PCCA | |
| pcca_plus |
Private PCCA+ Implementation Code¶
| has_constraint_violation | |
| fill_A | |
| index_search | |
| get_maps | |
| objective | |
| to_square | |
| to_flat |
Helper Functions¶
| NormalizeLeftEigenvectors | |
| trim_eigenvectors_by_flux |